rs49748256 SNP Detail

Summary

• ID
  rs49748256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109747143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCGGCTAG CTTTTCGTTA
  ATTTATTTAC ATTTTCTTTT TTTTTTATTT GCATGAGGTG GCTAGTTAAC TTTATACAGT
  ATAGATATTT TAATGCTCTT CTTGCTCTAA TGTAATGGGT TCATTAAAAA TGTGTACAAT
  CTAGAGTAAA AACAACCAAA GGCCTAGGAG AAAGCAAGAA AAGAGGCACT GAGAATGCTG
  R
  TTTTTTTTTT TCTATAAACA TTATGTGGGA AAAAGGAAGG GATGCTGATA GTTAACACAC
  AAGTTGTTTC TGGTGTCTCA GGGGCAGTCA GCTGGCACTC AAATGTTCTC TTCCAGTGCT
  GGTTAACCGG CACCTCCTTG GCTGGACTCC TCAACATCCT TGTGTTTAGG GAGAAAGAAG
  TCTGATTGGT GTCATGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147206158	ENSMUSSNP7187258	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49748256					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109747143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	670 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	849 bp upstream
Rr397176	regulatory region 397176	560 bp upstream
Rr562509	regulatory region 562509	359 bp proximal
Rr562510	regulatory region 562510	860 bp proximal
Rr562511	regulatory region 562511	965 bp proximal
Rr562512	regulatory region 562512	1004 bp proximal
Rr562513	regulatory region 562513	1392 bp proximal
Tssr19307	transcription start site region 19307	773 bp upstream
Tssr19308	transcription start site region 19308	798 bp upstream
Tssr19309	transcription start site region 19309	841 bp upstream
Tssr19310	transcription start site region 19310	881 bp upstream
Tssr19311	transcription start site region 19311	925 bp upstream