rs49749670 SNP Detail

Summary

• ID
  rs49749670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117162955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAAACAC GCGCGCTCAC ACTCGCGCCG GCCTGTCCAT
  CTCCCTCGGG GTGGGGGGAG CCGGCGCGCG GTCCCACCTT CGTCGCGCAC ACTGGATAGG
  Y
  GAGCTCGCAG CGCTCCACGA CTCTGCGGCT CGGAACTCGG ACCGCAGGGC TGAACACCCC
  TACTGTGGTG TTTAAAAAAA AAAAAAGACA TTTCTTTGCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62578171	NES17296241	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49749670					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62578171	NES17296241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117162955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	within coordinates
Gpc6	glypican 6	within coordinates
Rr497535	regulatory region 497535	within coordinates
Rr497536	regulatory region 497536	404 bp proximal
Rr497537	regulatory region 497537	595 bp proximal
Rr497538	regulatory region 497538	1517 bp proximal
Tssr127141	transcription start site region 127141	325 bp downstream
Tssr127142	transcription start site region 127142	263 bp downstream
Tssr127143	transcription start site region 127143	181 bp downstream
Tssr127144	transcription start site region 127144	149 bp downstream
Tssr127145	transcription start site region 127145	30 bp downstream
Tssr127146	transcription start site region 127146	within coordinates
Tssr127147	transcription start site region 127147	2 bp upstream
Tssr127148	transcription start site region 127148	15 bp upstream
Tssr127149	transcription start site region 127149	229 bp upstream
Tssr127150	transcription start site region 127150	260 bp upstream