rs49749753 SNP Detail

Summary

• ID
  rs49749753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135762192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGCCCA CTGTGGGCAG
  ACAGTTGGTG GTGGGAGAGT TGGGGCAGCT GCATTCCACA GCTGCTTCTG CCTCCTGCTT
  TGCTCTGGAG ACAGCTGATG AACAAGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA
  GGAGGTGACA TTTGAGTGCC CCCTGGAGGC ACTCTGGTCT ACCTCCCTGC TCTGCTGCTG
  Y
  GGTGGCCTGG GGACATCCTG CCTGTCATCG TGTGGGTATC CAGTGTGCAC CAGCCCGTGT
  ACTTCTTCAG ATCATCACAC TTCTGATTTT CTGCCTATCT GCCTAGGCCT GGTTATTTTT
  AACGACCAGA CCTCTAAGTT GCTTCTGGAG TCATCTTGCT ATGCACCAGT GTGGCTGCCA
  AGAAGTGGCT GTCTGGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss60803395	NES16472597	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs49749753					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803395	NES16472597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135762192 () rs orientation: forward

Symbol	Name	Function Class
Lad1	ladinin	1113 bp downstream
Rr419292	regulatory region 419292	within coordinates
Rr419293	regulatory region 419293	27 bp distal
Rr419294	regulatory region 419294	1410 bp proximal
Rr419295	regulatory region 419295	1970 bp proximal
Tnnt2	troponin T2, cardiac	1900 bp upstream
Tssr9005	transcription start site region 9005	1926 bp upstream