rs49750354 SNP Detail

Summary

• ID
  rs49750354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64656583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT CCACATTGGG ATCTTGAAGA
  Y
  GTAGTTCTAA CATCAGTGAA GAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148571220	ENSMUSSNP4845465	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321560890	CHEV_5_64890479	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49750354					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64656583 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr378042	regulatory region 378042	544 bp upstream
Rr612035	regulatory region 612035	1800 bp distal
Rr612036	regulatory region 612036	297 bp distal
Rr612037	regulatory region 612037	within coordinates
Rr612038	regulatory region 612038	1277 bp proximal