rs49750579 SNP Detail

Summary

• ID
  rs49750579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13013755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATTTGG AAAGGGAAGC
  TGGCCTTTGG CATTTGGCAG CCAAGGAAGG CTTCAGATAT AGCTTAGTGG TACAGTGTTT
  TCCTAGCAGC AACAGACCCT GCCTGGGTTC TATCTTCAGT AATATAAAGG GGAAGGGGGC
  AGATAACGAA ACTTAACTCT CAAAGAATAA AAATGTGAAA AAAAATAAAT GTCAGTAAAA
  W
  TTTCTCATTC TATGGAGAGC AGTCACCATT AAGATAGATC CACCTGTATC TATCCCATAA
  TGCTGGGTTT ACAGGCATGT ACAACCATGC CTGCCTGACA TTATTATTAT TATTATTATT
  ATAACATGGG TGCTGGAGAT TCAAACTCAT GTTCTCTCTC TCTTTTTAAC AGCAGGCACT
  CTTACCCACT GAGCCGTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970710	NES16157958	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49750579					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970710	NES16157958	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13013755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	485 bp distal
Lig1	ligase I, DNA, ATP-dependent	within coordinates
Rr400108	regulatory region 400108	887 bp downstream
Rr642459	regulatory region 642459	1696 bp distal
Rr642460	regulatory region 642460	1195 bp distal
Rr642461	regulatory region 642461	1382 bp distal
Rr642462	regulatory region 642462	554 bp distal
Rr642463	regulatory region 642463	981 bp distal
Rr642464	regulatory region 642464	within coordinates
Tssr64539	transcription start site region 64539	1264 bp downstream
Tssr64540	transcription start site region 64540	955 bp downstream
Tssr64541	transcription start site region 64541	929 bp downstream
Tssr70659	transcription start site region 70659	1121 bp upstream
Zswim9	zinc finger SWIM-type containing 9	1108 bp upstream