rs49751093 SNP Detail

Summary

• ID
  rs49751093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60940722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCGGCTT TTGCTGTCCC
  CTACCGCACT TCCTTCCCTT TTCTCTTTAA ACCTGACGTC ACCGTGGGGA TTGGGGACGG
  CACAGTGGAT GAAAACCCTT CTTCCTCTTA CATAGTAAAC TCACCTATCT TTTTCTGCCA
  GCAAAAACAA GATCAAATCC CCCTCCCCAC TTCCGAGGGG GGCTTAGCTC CTCAGATCTC
  Y
  AGGGTAGAGG GGACTCGGGA CTCGGGAGGA CTTTACCCTG TCACTACACA GAGGAGACAC
  CAAAGCCCAG AGGAGGCAAG GAACGTGGCT CATCCTTCCC ATTGAGCTTG GGCCCCAGGT
  GGATCTTCCT GGGAAGGACA CTTGGGGGCG GCAGGAGCAG ATGTCCTCAC TATTGGGAGG
  GTTTGAGTCT GAGAGGGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147250111	ENSMUSSNP6831038	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325640678	CHEV_18_60967304	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49751093					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60940722 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1025 bp proximal
Rr405671	regulatory region 405671	1693 bp downstream
Rr405672	regulatory region 405672	837 bp downstream
Tssr5344	transcription start site region 5344	21 bp upstream
Tssr151330	transcription start site region 151330	1682 bp downstream
Tssr151331	transcription start site region 151331	1663 bp downstream
Tssr151332	transcription start site region 151332	626 bp downstream
Tssr151333	transcription start site region 151333	72 bp downstream
Tssr151334	transcription start site region 151334	249 bp upstream
Tssr151335	transcription start site region 151335	258 bp upstream
Tssr151336	transcription start site region 151336	292 bp upstream
Tssr151337	transcription start site region 151337	346 bp upstream
Tssr151338	transcription start site region 151338	402 bp upstream
Tssr151339	transcription start site region 151339	581 bp upstream
Tssr151340	transcription start site region 151340	1257 bp upstream
Tssr151341	transcription start site region 151341	1280 bp upstream
Tssr151342	transcription start site region 151342	1312 bp upstream
Tssr151343	transcription start site region 151343	1372 bp upstream
Tssr153493	transcription start site region 153493	405 bp downstream
Tssr153494	transcription start site region 153494	427 bp downstream
Tssr153495	transcription start site region 153495	643 bp downstream