rs49751325 SNP Detail

Summary

• ID
  rs49751325
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:54075689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGATGA AGAAAATCTC
  CCCAGCTCTC AGAAGGTCTT CTTGCTGATA CGTTCCTGAA GGTGAAACTA CAAAACATAA
  TTCCTGAGTG AAACTCATTG TCAGAGTATC TTTATTTTGT CTCAAATGGG AAACTGTATG
  TGTGGTAGGA GGCACAGTAT CTTGGTCCAG GTCTGTTGGT AGGAAGCTGT TTCTAGTCAT
  M
  TGTCCACAGA GCTATTGCCA GGACAGCAGC AAGCCTATCT AGGCAAAGCT TGTCCCAGGA
  GTCAGAGGCC ACTGGGCAAA CCCTCCATGT GCTTTCTACC TCCTTAATGA ACACAGGAAA
  GTAGATGGGC TAGCTGCATG CCTATTTTGA TTCTCAGGAC AGCAGCAAAG CTGAACTTGC
  TGTTCTCTGT GTAGGCAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62787614	NES17356791	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49751325					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62787614	NES17356791	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:54075689 () rs orientation: forward

Symbol	Name	Function Class
Tssr145231	transcription start site region 145231	1160 bp upstream
Tssr145232	transcription start site region 145232	1168 bp upstream
Tssr145233	transcription start site region 145233	1196 bp upstream