rs49751340 SNP Detail

Summary

• ID
  rs49751340
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25954336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTATGT TTGTTTACAT
  GAACTGCCAT TTTTCATTGC TTTACACAGG CCAACATTAC ATCAATCAGA ATCCTAAATA
  CTGCATTTTC TATGAAACTT GACAGTTCTT CTTACGTCAA TATGTGCATT CTGAGGTGTG
  AATACATGGT AACTACTACT GTCAAAAATT TTGGAGAAGG TCTTTTTAAT GTATTCTAGG
  S
  TGGCATGAAC TCCTGGCCTC TAAGGATTCT CTGATTTCAC CTGTCAGTAA TACCATTTAT
  TAAAGGTGTT GTCCCATACC CTAAGATCCA ATAATTGGAT CAAAATTATT CATTTTGACC
  AGAGAAATAG TGTGGTATAT TCTAAAGGAA ATTTTGCTGA ATCACAGAAT GTACTTCTGG
  AACCTAACCT ATAGAGACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60978850	NES16140103	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49751340					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60978850	NES16140103	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25954336 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r-ps86	vomeronasal 1 receptor, pseudogene 86	169 bp upstream