rs49751946 SNP Detail

Summary

• ID
  rs49751946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97938591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGCAAAC TTGATCCCTA
  GTTGGTAGCA CTGTTTTGGG AGGTTCGGGG GTTGTGATCC TGCTGGAGGA AATTCAACAC
  TGGTGGAGGG TTTTGAGAGT TTAAAGACTT ATGCCATTTC AAGTTTGCTG TCTCTGCTAC
  CTGTTTGCAG TTCAAATATG AGCACTCAAC TATGCTGCAT CTGTTGCTTG CTGCTGTTTT
  Y
  CTGCTGCGAA CCTTATTCTG CTAGAACCAT AAGCCCAAGT AAATTCTTTC TTCTTAACAC
  TGCCTTGCCC ATGGTATTTT ATCACAGCAA CAGAGAAGCA ACAAGTAAAC TCTGCTTGAA
  CTACCCCCTG TACTTCAGTT GCTCCCTGGA AAACATCCAG TATTCTCAAC CCTTTCTTGG
  ATCTCTTACT TTCTTTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61683912	NES17636573	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49751946					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61683912	NES17636573	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97938591 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	1810 bp proximal
Rr269010	regulatory region 269010	1575 bp proximal