rs49752578 SNP Detail

Summary

• ID
  rs49752578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164268498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAGGAC AGCCAGGGCT
  GCCTACATAG ATTCCGTAGC TCACAAAAAG AAAAAGAAAA TCCACGTTTT GATTTGATTT
  CCTTTGGGGT AGCAAATATC ACGGAAACAA ACTGACATGC AAGAGAAACT GAGCAGTGTT
  CATGTCAGCC TTAGGGGACC CTGGAGACCA AAGCCACGCC TATGGAAGGA TGGCATTGCT
  Y
  CATTCATGGT CTGAGAAATA ACCGTTCAGA AAAGATGAGA CAACACCAGT TCTTTTCTGT
  AAAGAATTTC TTACAAAATG GTTAACAGTG ACAACCTGCT GATCAAGTAA TGGTCACTTG
  TTAGAAACTG TGTGGTTATC AAAGGGCAGA GACCGTGGTA GGTTCTAGGT TTAGTAATGA
  AATCATCACT CGGGGAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337230	NES15839820	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49752578					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337230	NES15839820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164268498 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr20253	regulatory region 20253	1098 bp distal
Rr25448	regulatory region 25448	1538 bp distal
Rr31656	regulatory region 31656	within coordinates
Tssr14743	transcription start site region 14743	629 bp downstream
Tssr14744	transcription start site region 14744	678 bp downstream