rs49752988 SNP Detail

Summary

• ID
  rs49752988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:3415011 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCATA GTTCAGGCAC CTCTCCCCAT
  Y
  CAGTCTCCTC TTCTTCCTGG ACCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63342981	NES17508905	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	C	T	T	C		C	C	C	C		C
ss148166018	ENSMUSSNP2273503	ENSEMBL	ENSEMBL_Sanger	r	SNP		A							A
ss322091730	CHEV_7_3366084	CHEVERUD	SCREENING_POP	r	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49752988					SNP	T	T	C	C	C	T	T	C	T	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63342981	NES17508905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3415011 () rs orientation: reverse

Symbol	Name	Function Class
Cacng7	calcium channel, voltage-dependent, gamma subunit 7	within coordinates
Cpgi18210	CpG island 18210	114 bp proximal
Gm72265	predicted gene, 72265	within coordinates
Rr641804	regulatory region 641804	1716 bp proximal
Tssr64254	transcription start site region 64254	524 bp downstream
Tssr64255	transcription start site region 64255	307 bp downstream
Tssr64256	transcription start site region 64256	282 bp downstream
Tssr64257	transcription start site region 64257	382 bp upstream
Tssr64258	transcription start site region 64258	445 bp upstream
Tssr64259	transcription start site region 64259	885 bp upstream
Tssr64260	transcription start site region 64260	915 bp upstream