rs49755424 SNP Detail

Summary

• ID
  rs49755424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:25589900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGAGTC CTATCCCGCT
  TAAACCAAGA CAGACAAGAA AGTGAAAGTA AGACTGCCCA AACTGTTCAT GGAGGAGAGA
  TCTCACAAGG GGAGCGCTGT GCCCAGCCCA AACTCCTAGC AACCAAGGCC CCCTGGAGGG
  GACAGAATAA AGAAAGCCTC CTTGCTTTCT GAGACCCAAA AAGCGTCAGC AGTCTACATC
  Y
  AGTTCAATCT GAGCCATCTA GCCGGCCACA GGGACATCGC CCAGATGTGC ACCTGTATCG
  ACTCGAGGAA GTATCAGCGG GATGCACACA TGGCCGTGTT CCTGCTCCTT GGTCGTCTAG
  TGTTGTAGCA CACACCTGGG AGCAAGTGCA GGACTGCTGC TCTCCTGGGG TTTGGTGGGC
  CAGCTAACAC TTGTCTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60584296	NES16331505	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49755424					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584296	NES16331505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25589900 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20179	CpG island 20179			1664 bp proximal
Gm63711	predicted gene, 63711			within coordinates
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2			Intron
				Noncoding-Transcript-Variant
Rr661036	regulatory region 661036			1757 bp distal
Rr661037	regulatory region 661037			332 bp distal
Rr661038	regulatory region 661038			669 bp proximal
Rr661039	regulatory region 661039			1358 bp proximal
Rr661040	regulatory region 661040			1859 bp proximal
Rr661041	regulatory region 661041			1928 bp proximal
Tssr2524	transcription start site region 2524			1722 bp upstream
Tssr76668	transcription start site region 76668			1188 bp upstream
Tssr76669	transcription start site region 76669			1986 bp upstream
Tssr80677	transcription start site region 80677			1715 bp downstream
Tssr80678	transcription start site region 80678			1818 bp downstream
Tssr80679	transcription start site region 80679			1850 bp downstream