rs49755789 SNP Detail

Summary

• ID
  rs49755789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52649065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACATTCT GTAATGTCTA
  CTGGCAAAAG ATCATCTCAG CTGGGCTTGT TGACCCACAC CTGCTCATAA AGGGGCAGGG
  AGGTCAGGCG ACCCTTACCT GAGTATCCAC CCTACCTACT GTAGTACGCA ATTTTATCCA
  TAACTAGAAG TGGCCTCGCT GAGGGGAGGG GTAGAGTCTG TAACCTAGGA AGACTAAGGG
  R
  GTGGGGTGGC TGGGTGGAGA AGTCTTCATC CCGACTGGGT AAAGGCTTTC TAGGCGTAAC
  TTGGGGGGAT GAACACCCTG GCTCTGTGAG CAACTCCTCC TTTACGTCAT AGAAGGAAGC
  TCAACTCACC ATTCCCTCCG CAGAGTGTCC TTTGGAGGAC TCTTCTGTTT GCTGCTGGAA
  CAAGGATAGG CCTTGTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137738300	ENSMUSSNP3415465	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49755789					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52649065 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	within coordinates
Cpgi4596	CpG island 4596	692 bp proximal
Gm24859	predicted gene, 24859	1506 bp upstream
Rr387217	regulatory region 387217	1756 bp downstream
Rr403283	regulatory region 403283	1371 bp upstream
Rr466025	regulatory region 466025	within coordinates
Rr466026	regulatory region 466026	26 bp proximal
Tssr116285	transcription start site region 116285	29 bp downstream
Tssr116286	transcription start site region 116286	81 bp downstream