rs49757713 SNP Detail

Summary

• ID
  rs49757713
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:144414419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC CCCATCAGGC CAGAATGGCC
  W
  CAGTTGGGTG TGGGGGTGCT GGTGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145992470	ENSMUSSNP1727793	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322484926	CHEV_7_152046587	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49757713					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:144414419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20003	CpG island 20003	242 bp proximal
Cpgi20004	CpG island 20004	1959 bp proximal
Fgf4	fibroblast growth factor 4	704 bp upstream
Rr366757	regulatory region 366757	within coordinates
Rr381621	regulatory region 381621	1613 bp downstream
Tssr70358	transcription start site region 70358	696 bp upstream