rs49758565 SNP Detail

Summary

• ID
  rs49758565
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAGTCCC AGGGAGCTTA
  GGTTGGGGCG GGGAGGGTGT TCTGGTTTAC CAGTGATTTT ATGACTGAAT ATTCCACTAA
  TTGTAAAATA CATTTTTAAA GAATCACGAT AAATCCCAGG TCACAGGATC TGAAACTTCC
  GGTCAGTGGT AAGAAACCAA TGACAGAACT GTGAGAGCGG CGTCCTTAAG AGCAGCTGCG
  G
  AAAACACCCC GCTGCTCCGC TCCCTCCCGT TTCCCAGCCC CGCAGCTCCT CTAACCTGGG
  ACCTTTCGGG GCCGCCGGGC TGCTGTGCCG ACAGTTGCGC TGCCGACTGC CGCCTCTCCC
  AGGCCCTCTG CCACGGAAAT GCTTCTGAGG AGACTTTTCC GGGTCCAGAA ACAGCTAGGA
  CGCAGAAACC GAAAGGTAGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145304090	ENSMUSSNP2263039	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49758565					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533672 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	231 bp upstream
Rr392409	regulatory region 392409	1878 bp downstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	136 bp proximal
Tssr146602	transcription start site region 146602	103 bp downstream
Tssr146603	transcription start site region 146603	123 bp downstream