rs49758601 SNP Detail

Summary

• ID
  rs49758601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG CCCCACTGTT TTCCTATTGG
  R
  TGGGCTAGAG GATGCCAATC AGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146361631	ENSMUSSNP1151676	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A		G
ss325801302	CHEV_19_38193452	CHEVERUD	SCREENING_POP	f	SNP				A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49758601					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	262 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	951 bp proximal
Tssr156245	transcription start site region 156245	628 bp downstream
Tssr159114	transcription start site region 159114	643 bp upstream
Tssr159115	transcription start site region 159115	587 bp upstream
Tssr159116	transcription start site region 159116	485 bp upstream
Tssr159117	transcription start site region 159117	471 bp upstream