rs49759640 SNP Detail

Summary

• ID
  rs49759640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGTCAC ACTGGGTACC
  ACATTGTATC TTTTTGCCCA CCATCTTTAC TTGCAAATGA TCTGGTTCAA GGTCTCTGGC
  TTCTGCTACA CTATAGATAC TGGCTCCTCA CCTGGACTCC TCTTGGATAC TATGTTGAGG
  CCCTGTGTTT TAGAGATCCT GCAGCTTTGG ATCTGTAGGA CTGGCCCCTT CACATGTTCT
  R
  GCAGTTCATA GATGGGGTAG ATGTTGGGGT GGGCCAACTC AAAGTACTGG GTCTGGGCCT
  GGATGGAAGC TGAGTTGGTC AGCTTTTTGC CCAGGCGAGG GGTAGGGCCA GCTCTTCCAG
  TTGCTGCATC TGATGAGAAA CAGGGCCAGC TCTGCACAGC TCTCAGATGT CAACATGGCT
  TCAGGTGACA GTCTAGACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145647216	ENSMUSSNP1777862	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss322398743	CHEV_7_117909884	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49759640					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365577 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1836 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	307 bp downstream
Cpgi19579	CpG island 19579	1713 bp proximal
Rr653308	regulatory region 653308	1423 bp proximal
Tssr68503	transcription start site region 68503	1693 bp upstream
Tssr68504	transcription start site region 68504	1736 bp upstream
Tssr68505	transcription start site region 68505	1768 bp upstream
Tssr68506	transcription start site region 68506	1799 bp upstream