rs49759811 SNP Detail

Summary

• ID
  rs49759811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97228067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCCTG ATTACAGCTG
  TGCACCACCA CACTCTTAGA GTGTCCTTTC TGTTGTATCA TGCTCATCAC TGACTGCACC
  ACTGTTTTTA AATTAAATTA TGTTTTATAT GGTATCAGTA CTCATCGCTG CTCTCTTTTT
  GCGATATCCT TTTGTTTTTC TTAGCCTTTA AAAAAGTCAC TTTGATAAAC TAAAATGATA
  R
  TAATAAAGTC AGATATTGAT GGCTTTTGCT ACTTAATGCA GTATGTCGAT CTCTGTTTCC
  CATCAGACAG ACCTAGCCTA TGCATAGCAG AGATGTTATT CTATCCCATC AGACACAGTT
  GCTCTTACTT TGTGTCTCTG TTTAGCTTTC CCGCTGGGTT GAGCTACATC CTCATTGCCT
  TGTCAGCTAG AAACCCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss63608912	NES17040855	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		A		G
ss325076633	CHEV_15_97160617	CHEVERUD	SCREENING_POP	f	SNP								A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs49759811					SNP	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608912	NES17040855	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97228067 () rs orientation: forward

Symbol	Name	Function Class
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391161	regulatory region 391161	1864 bp upstream
Rr508789	regulatory region 508789	1815 bp distal
Rr508790	regulatory region 508790	1698 bp distal
Rr508791	regulatory region 508791	353 bp distal