rs49761495 SNP Detail

Summary

• ID
  rs49761495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGACCCACA CTTCCTGTAA CATCATGCAG CATTGCTTCT
  CGTGGGTTAG TGAGCACTCC AAGGTTTTAA AACCTTAAAA TATAGCATGA TTGAATAGTT
  R
  AAAAAAAAAA AATCAAATCT GTGTTCCCCC AAAACACTAA AAGCTCCTCT CTTGGAAACT
  GGCTGCCAAT GAAGCAAATT GGAAAGCTGC AGTGAAGAGT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147546860	ENSMUSSNP850625	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49761495					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	1105 bp proximal
Gm15979	predicted gene 15979	1225 bp upstream
Gm69862	predicted gene, 69862	1863 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr39615	transcription start site region 39615	1950 bp upstream
Tssr43991	transcription start site region 43991	1678 bp downstream