rs49762137 SNP Detail

Summary

• ID
  rs49762137
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3843406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCTCTC CCTGTAGGTG
  TGGCATTGGC TTAGGAAACT CCAGGGAGAC CTGCCTAGCC AAGGGGAGAA GCCATAGAGC
  ACATAGTCCC TGCTTAGGGG CAACCTTAAT TATGTCAACC ACAGCTCCAA GATTCCCACA
  GGGTAGGAGC TCAGTAGATG GTGGTAAACC ATTCCCTAAG GCTACTGGGA ATAGTTCTAG
  K
  GTCCACAGCA GCCTCTCCCC TTGAGTACCC AAGTTAGACC TGGAAGAACC AGCAGAAAAC
  CCAGGATCCA CGACATCTGA CTCCCTACTC CATCACTTCT TGGGCTAGAG GCTCAAATTC
  TCTGGATTCT GAACCCCAGA GGCCTGTGCT GGGGGCTCCA CTGGGAAGTA TAGAAAGCTC
  CTTATTCCTG GCCTGGTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61337743	NES16944833	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49762137					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337743	NES16944833	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3843406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4361	CpG island 4361	1211 bp distal
Gm60243	predicted gene, 60243	within coordinates
Rr403217	regulatory region 403217	1286 bp downstream