rs49762181 SNP Detail

Summary

• ID
  rs49762181
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:85878795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTGCGC GGCGGCGCCT
  CGCCCATGGC TGAGGGCCGG CGGCGGGAGG ACGAGGAGGA AGAGCTGCGA GAGCGCCGCG
  AGCTTGGGGG CCCGCGCCGC GCCCGGAGCC GCGCGCTCCC GGGCCACTCG GCTGCAGGTG
  AGACGCGGGG GACGCGGGGA CCAGGGGCGC ACGGGGGGTT GGGAGCATCT AGGACCGGGT
  C
  CTCCGCGCCC ACTCATGCCC TGCCCAGCTC GGCAGCTGCT CTCGATGCTG CCTGGAGGGG
  ACTGACACCT TTAACTCCTG ATGGCGAGAG GGCGGGACAG TGGCCTTTCT ATCCTTAGCC
  TCCTTTTCTC CTTTTTGAGA GAATTCAGAT TGGTCTCTTT TACCTGTTAG TGGCCCTGGA
  GCCGAAACTC CAAAATTTCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss135442597	ENSMUSSNP4810676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs49762181					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:85878795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13322	CpG island 13322	within coordinates
Rr579285	regulatory region 579285	369 bp distal
Rr579286	regulatory region 579286	within coordinates
Rr579287	regulatory region 579287	1965 bp proximal
Sh3d19	SH3 domain protein D19	within coordinates
Tssr29770	transcription start site region 29770	313 bp downstream
Tssr29771	transcription start site region 29771	252 bp downstream