rs49762358 SNP Detail

Summary

• ID
  rs49762358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122967928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATGAAAA CTGTTTCTGT GTTGAGATTT
  TATCTTGAAG GAACTTTTTC ATTTATACTA TAGATCACAG AAGAACCTCT CACTTGATGG
  CTAGTTGCTG TGCCACTAAA TTGTACCTTC CTCCATGAAG TTTCCAGCCA TGTGGTGGTG
  R
  CTAGCAGACA GACATTATGC TAAAGTGATG GACTATGAAT AGAAATATTT ATCTGTTATT
  GTATATGTGT CTTTAATATT TTGGCAGTTT GGAAGTTATT TATGTATACA GTGCTGAATC
  TATAATAAAG AACACTAAGA AAACATAGTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60937735	NES16191475	PERLEGEN	MM_PANEL2	f	SNP	G	G		G	G	A		G
ss321934843	CHEV_6_122940987	CHEVERUD	SCREENING_POP	f	SNP			G				A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs49762358					SNP	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937735	NES16191475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122967928 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	within coordinates
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	384 bp proximal
Tssr58744	transcription start site region 58744	661 bp downstream
Tssr58745	transcription start site region 58745	604 bp downstream