rs49762898 SNP Detail

Summary

• ID
  rs49762898
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGACT CAGGGGGAGG
  TATATATCAA GCCAGGAAGT TGACATTCGC AATGAAATCT TTATGCATGC TGAAATATCA
  GCTGGTATCA AACGGAACAC TTAGGGTTTG AGAGGTAATG TACTGAGTAT GAAAATCAGC
  GACGAAGCTG GAATCTGGAG GTAGCGTAAC TAAAAAAACA AAAAGTTAAG GTGAAAAGTT
  S
  TGTGTTCCTC TGAGCTTTTA AGTCTCACTT TAACAGGAGT CATTTAAAAA TAAAATAGTT
  TTTCTCTGTT ATTCCCATTC TGTCATCAAA ATAGAAACAA TAGATGCCGT TTGTCATTCC
  AGCGTAGTCA ATCCAGAAGC CAGCGAAGGC TAATACTGAA TGTGTAGAAT GAGTTCTTCC
  ATATCTAGGT TATCGGCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60499940	NES16521740	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49762898					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499940	NES16521740	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	580 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139179	transcription start site region 139179	1937 bp downstream
Tssr139180	transcription start site region 139180	1908 bp downstream
Tssr139181	transcription start site region 139181	1719 bp downstream
Tssr139182	transcription start site region 139182	1667 bp downstream
Tssr139183	transcription start site region 139183	1638 bp downstream
Tssr139184	transcription start site region 139184	1615 bp downstream
Tssr139185	transcription start site region 139185	1574 bp downstream
Tssr139186	transcription start site region 139186	1518 bp downstream
Tssr139187	transcription start site region 139187	1498 bp downstream
Tssr139188	transcription start site region 139188	1480 bp downstream
Tssr139189	transcription start site region 139189	1389 bp downstream
Tssr139190	transcription start site region 139190	1373 bp downstream