rs49767539 SNP Detail

Summary

• ID
  rs49767539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31095399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAACTCA GAATAAACCT
  CGATTTCCTG CAGAAGGAAA TTGTCAATTT AACAAAACAG ATGGGGCCCT CGACTGAAAT
  GTTCAAGTTG CTCCAGGACA GTGAAGAAGT GTCGCTCTGC TGCTCTCCTC ATGTGGAGTC
  GTCTTGCCCG CCCACAGCTA CTTCCACAAA CTTCATTCTT TCTATTCTGG AGGAGGAGCC
  R
  TTCCAAATCA CTCCCATTCC TCTCTCCTTC CCTGATCAGA GATGTGATGG GAGACCAAGC
  AAGGTGACCC AGTGCTAACC TCAGAGGAAA CTGACATTCC TTCTGGAAGT AGAATATAGT
  GATAACCTCT GATAAGTCCC TAACGCTATT GCTTCCTCTC TGCTGCTGGC CAAAAGCACC
  TTAGGGGAAG ACAGGTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60563339	NES16495471	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49767539					SNP	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60563339	NES16495471	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31095399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	1713 bp distal
Dnah8	dynein, axonemal, heavy chain 8	663 bp downstream
Gm9937	predicted gene 9937	1141 bp upstream
Gm50252	predicted gene, 50252	within coordinates
Rr330583	regulatory region 330583	1599 bp distal
Rr337287	regulatory region 337287	1141 bp proximal
Rr341200	regulatory region 341200	1399 bp distal
Tssr147267	transcription start site region 147267	1389 bp upstream