rs49768424 SNP Detail

Summary

• ID
  rs49768424
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82515499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTCTTTT TTGCAGTGTT
  ACGAAGTTCT ACACCAACTC AGGCTCCACC TCTCTCCAGC TTCCATCCAG AGGCACACTC
  TTGAAGGCCT TGCAATCCTG GCACTCTGCC AAGAACACAC CACATCCCTG CTTTCCGGCC
  AGGGAAGACA GGACCCAGAA ACCAAGGAGT CAGCCCCTCA CTCTCACAAG TTTGTACTCA
  K
  TTCAGTTGGA TTCTAAATCT CTGCACTCAC CAGACCTCTA GCCTTCTGTG CCGGACCTTG
  TCCCCAGGAC CCCGAGGAAA ACCCTTCTCT TTCTCTTTAG AGATGGCTTC TTCCTCCTTG
  ATGCTTCCTC CAGCACTAAG CGCGTTCCAG CTTCTCACTG GATGGCACCT GCTTGGCCTC
  TCGTCTCAGT AGCTTCTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61656686	NES17599888	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49768424					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61656686	NES17599888	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82515499 () rs orientation: forward

Symbol	Name	Function Class
Gm61154	predicted gene, 61154	within coordinates
Rr387523	regulatory region 387523	1647 bp downstream
Rr469294	regulatory region 469294	767 bp distal
Rr469295	regulatory region 469295	621 bp distal
Rr469296	regulatory region 469296	within coordinates
Rr469297	regulatory region 469297	827 bp proximal
Rr469298	regulatory region 469298	1386 bp proximal
Rr469299	regulatory region 469299	1454 bp proximal
Rr469300	regulatory region 469300	1657 bp proximal
Rr469301	regulatory region 469301	1916 bp proximal