rs49770222 SNP Detail

Summary

• ID
  rs49770222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31342983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTAAA ATAAAAGCAC
  ATTCTTACAA TGTTCCTGTG GGTTTTTTTT TTAAGAAACC AAAATTCCAG AATCCTCAAA
  AATGTCACTA CAAAGGTGAG TGCCCCAAGT CTAATGTCAT TAGCATGGGG ACCAGGGCAC
  ATTGCTGGGT AACGTGTTCA CCTCACATGA AAATGTACAG AAAACTCAGC TGTCAAGACA
  R
  AATGGCATTT AAAAATCAAA AGTAATACAT AGATATGTAG TGAATAAAAT GTCAAAAATC
  TGTGCTTAGA TAAGAGTACC CCACTTCTAC ATTGTAATCT TGGCCCTGCT TCCAATAAAC
  CTTTATTTAT TAAAGCAAGT AGGAGCCAAG GAGGCAGGGG CTTTGCCTAC CATACAGGCT
  CAAATGTCTG TCTCTGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60562274	NES16490737	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49770222					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562274	NES16490737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31342983 () rs orientation: forward

Symbol	Name	Function Class
Rr330604	regulatory region 330604	1383 bp distal
Rr334775	regulatory region 334775	1218 bp proximal
Rr341219	regulatory region 341219	1583 bp distal
Tff3	trefoil factor 3, intestinal	1297 bp downstream