rs49771060 SNP Detail

Summary

• ID
  rs49771060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGTAAA GACGCCTGGT
  GCCAAGCGTG GCTGCTTGAG TTCAGTCCCC GGAACTCGGA AGGTGGAAGG TAAGATCCTA
  GTCCTCCAAA TTGTTCTCTA ACCTCTACAC CGCTCTGAGG CTCCAGGGTA CTTACACACA
  TACACGGAAA CAATCAACCA GTCAAACAAT AAACGTAAAA TATTACAATT CTTTAGGGAA
  Y
  CCAAGGGTAT TTGGTCTCTT AGGTAGGGGT CCAAAATCTC TGGGGATAGG GTTTAGAATC
  CTTTGGACAG GCTCATTACA TCATGGGGGG CTTAAACGCA CTAGTGGGGG AGGGGGACTG
  GGAATCTTGG GAGGGCGGGT CAAACCTTGG TGTCTGAGTA AGTCCTTCAA GGACTGGTTA
  GCGCCCTTGA GGACAGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147984250	ENSMUSSNP6485004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49771060					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	292 bp proximal
Hck	hemopoietic cell kinase	315 bp upstream
Rr567550	regulatory region 567550	115 bp distal
Rr567551	regulatory region 567551	38 bp proximal
Rr567552	regulatory region 567552	354 bp proximal
Rr567553	regulatory region 567553	518 bp proximal
Tssr20863	transcription start site region 20863	480 bp downstream
Tssr20864	transcription start site region 20864	444 bp downstream
Tssr20865	transcription start site region 20865	321 bp upstream
Tssr20866	transcription start site region 20866	336 bp upstream
Tssr26882	transcription start site region 26882	865 bp downstream