rs49772459 SNP Detail

Summary

• ID
  rs49772459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73261572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTAAGAT AATCTTCTAT
  AATTCTGCTT CGGGCCCATC TCCCAGATGA TCTCCCAGTC AGAATAACCA CCATAGCTGA
  TTTACTGTGT CCCTTTGCTG ATCACCTTTA AATGTGGCCA GTGCCTGTAC CATGCAGCAA
  AGCACTGTGA ATGGTAAGCA ACTATAGCTA CTGTGGTGCC ATTAAAGCTA CTGGATTCTA
  Y
  AGACACAGGC TGGAAGACAT GGAGTAAGTC CCTGTAGCTG AATTTATTAC TTGCTCAACA
  TTTGCATTGA TGAATTGAAG GTCATACACA TACATTTACA AATCAACTGT AACCCAGCTA
  TAGCAGCACC TACAACAATT AAAATAGGAA GAGGATTGTA GACACAGCAG TGAATTTAAA
  CCAGAGGAGG AATCTAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325246933	CHEV_16_73464929	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49772459					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73261572 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	within coordinates
Rr518000	regulatory region 518000	1818 bp distal