rs49774298 SNP Detail

Summary

• ID
  rs49774298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36916863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCATCTC TCCTGAAATT
  ACTGTTTCAT TATTTCTATT CTCATCTACT AGGAAAACAG AGTCCCCAAA CATCCTCCAG
  GTGAAGTCCC TATCTTAAAA CATTAGCTGT TTCTTAATCT ATGAACATTA GTCGTCTAAC
  TGCAAAATGC CACACTCACT TATTTCTAAC ACTTACAGCA TTTGCTGCCC TTGGGATCTA
  Y
  GTCCTAGGAT GGTTGCAGCT CTTTGAACTA ATGTCAAAGG CACAAAACCA CCAGATGCAA
  AGCATTAAGT CATCTCCTAA AATTAAAGGA AAAGGCAACA TCCCGGTGCA TGCTCCTTGC
  TTTGCAAAAA TCCCAGTTTC TGCAAAACAA TAAACAAATA AACAACCAAA AAAATCCCCC
  AAACAAATTC TCAAGAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61769738	NES17697930	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49774298					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769738	NES17697930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36916863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	546 bp distal
Cpgi5451	CpG island 5451	1922 bp proximal
Gm30177	predicted gene, 30177	1587 bp downstream
Gm56572	predicted gene, 56572	1999 bp upstream
Nrn1	neuritin 1	Intron
Rr477392	regulatory region 477392	1154 bp distal
Rr477393	regulatory region 477393	653 bp distal
Rr477394	regulatory region 477394	348 bp proximal
Rr477395	regulatory region 477395	1578 bp proximal
Tssr119271	transcription start site region 119271	1967 bp upstream
Tssr122097	transcription start site region 122097	1377 bp downstream
Tssr122098	transcription start site region 122098	1404 bp downstream
Tssr122099	transcription start site region 122099	1482 bp downstream
Tssr122100	transcription start site region 122100	1515 bp downstream
Tssr122101	transcription start site region 122101	1537 bp downstream
Tssr122102	transcription start site region 122102	1561 bp downstream