rs49775056 SNP Detail

Summary

• ID
  rs49775056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83722317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGAAAAC TGTGGCTGGA
  GTCGTAATCT TTGACAAGCA CGTCGTAATC ATGGTGAAAC TCACACGTGG ATGCCGTGAG
  GCCAAACTGA GCTGCAGTTT AGGAGAAGGA CATTGGGTAA AGGAGAGTGG ATAGTCTTAG
  TGATTAAGCA GTGCTTAATC CACCAGAACT AATTATATCA TAATAACCTC TGCAATTAGA
  Y
  AATTACCTAA ACTTATATTT TTAAAAATTT ACTCAAGGTA ACAAAGAATA AAGAAATTGA
  AAGTCAGCTG AAGGTCAGAC CAAGTATCTA ACAGCTTTTT CTGTTCCAAG AACCTTGAAC
  TAGAGCCAAA TAATCTATTA AGTAGTCAGG ACAGTGGCTT AGCGTTACAT AATACATGTG
  GGAATTTTTC AGGTCCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61892662	NES17096057	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49775056					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892662	NES17096057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83722317 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr399	regulatory region 399	1949 bp distal
Rr1598	regulatory region 1598	76 bp downstream
Rr483253	regulatory region 483253	566 bp distal
Rr483254	regulatory region 483254	within coordinates
Rr483255	regulatory region 483255	610 bp proximal
Tssr120502	transcription start site region 120502	1841 bp downstream
Tssr120503	transcription start site region 120503	1808 bp downstream
Tssr120504	transcription start site region 120504	1785 bp downstream
Tssr120505	transcription start site region 120505	595 bp downstream
Tssr120506	transcription start site region 120506	277 bp upstream
Tssr120507	transcription start site region 120507	941 bp upstream
Tssr120508	transcription start site region 120508	1427 bp upstream
Tssr123330	transcription start site region 123330	800 bp downstream
Tssr123331	transcription start site region 123331	1455 bp downstream