rs49775387 SNP Detail

Summary

• ID
  rs49775387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87751404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCCCCT CACTCTGTAG
  ATGCACACAA GTCACCTTGG GTCTGCTCTA GTGAAAGCAT AGATGTTTGC AAATTACCAG
  CTTATTTCCA CTAATTTGGA GCTAGTCACC ATAAGCCACT ATGGCTTTAC CATTGTACTT
  GTTGGCTCTC CCCATAGTCT GGGGGCTGTA GAGATTGTAA GTATACAGCC CCTTCCAGCC
  R
  CCTTGGCTAC TCCTGGACAT TCAATTCTCT GAGGCAGCAT TGCTCACTGT ACTACTTTAA
  GTTGTTCACT TTCTTGGCAA ATTCAGATTT CATAGAAAAC TCATGGGGCA GCCATGTTAA
  GAGTGATGTC ATCAGTGAGG AGAGTCATGG GAGTAGAAGG TGAAGACCAA GGCTCTCATG
  GTCCAAAGTC AATGATGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60762280	NES16403532	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49775387					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762280	NES16403532	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87751404 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr414853	regulatory region 414853			1275 bp proximal
Rr414854	regulatory region 414854			1370 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)			Intron
				Noncoding-Transcript-Variant