rs49776131 SNP Detail

Summary

• ID
  rs49776131
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119232450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTG CTCAACTTTG TAGGAGCTCC
  S
  GGGCGGGCTT AGGGCAGTTC CAGGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137047115	ENSMUSSNP3585755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49776131					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119232450 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	within coordinates
Gm47320	predicted gene, 47320	1724 bp downstream
Gm53515	predicted gene, 53515	1486 bp upstream
Gm69683	predicted gene, 69683	1916 bp upstream
Rr688480	regulatory region 688480	1927 bp distal
Rr688481	regulatory region 688481	930 bp distal
Rr688482	regulatory region 688482	1400 bp distal
Rr688483	regulatory region 688483	within coordinates
Rr688484	regulatory region 688484	843 bp distal
Rr688485	regulatory region 688485	683 bp distal
Tssr87682	transcription start site region 87682	1231 bp downstream
Tssr87683	transcription start site region 87683	1159 bp downstream
Tssr87684	transcription start site region 87684	1115 bp downstream
Tssr91983	transcription start site region 91983	91 bp downstream