rs49776571 SNP Detail

Summary

• ID
  rs49776571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121949582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTT GGGAGTGTAA ACTTCTCAGA
  Y
  CAATAGATCT CCTTTTGAGG TCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147409364	ENSMUSSNP7113423	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49776571					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121949582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	505 bp distal
Gm75635	predicted gene, 75635	112 bp downstream
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	1007 bp downstream
Rr55508	regulatory region 55508	within coordinates
Rr373779	regulatory region 373779	within coordinates
Spg11	SPG11, spatacsin vesicle trafficking associated	715 bp upstream
Tssr19803	transcription start site region 19803	547 bp downstream
Tssr25950	transcription start site region 25950	752 bp upstream
Tssr25951	transcription start site region 25951	704 bp upstream