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rs49776571 SNP Detail
Summary
  • ID
    rs49776571
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:121949582 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GATTT GGGAGTGTAA ACTTCTCAGA
    Y
    CAATAGATCT CCTTTTGAGG TCAAA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss147409364 ENSMUSSNP7113423 ENSEMBL ENSEMBL_Sanger f SNP T C C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs49776571 SNP T C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:121949582 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12168 CpG island 12168 505 bp distal
Gm75635 predicted gene, 75635 112 bp downstream
Patl2 protein associated with topoisomerase II homolog 2 (yeast) 1007 bp downstream
Rr55508 regulatory region 55508 within coordinates
Rr373779 regulatory region 373779 within coordinates
Spg11 SPG11, spatacsin vesicle trafficking associated 715 bp upstream
Tssr19803 transcription start site region 19803 547 bp downstream
Tssr25950 transcription start site region 25950 752 bp upstream
Tssr25951 transcription start site region 25951 704 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory