rs49776585 SNP Detail

Summary

• ID
  rs49776585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77126203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTGTGA CCTCGGGTCA
  CAAGTAATGG CTGCAAGCTA ATTGATTGAG AAAGGCTTGT CTGGCAGGGC CCCTTTTGCG
  TCCTGCCTGT ACATTCCGAA GTTCTGTGAA AAGAGGCACT AGCGCTCAGC CACGCAAGGC
  AGGAAAACAG AGGAAGTTTT CGCATTCTGA CTGCAGCCTG AGTTCCCCGG AGCAAGGCTG
  Y
  TTCTCTCCAC CCACTCCTCA CCAAGAACTC CTGAACTTGA GAGTGGACGA CTTCAAAGCT
  AGCTCTCACA GACTCACCTG GAAAAGAGTT CAGCTGCGCG TTCATTGAAC CGAGAGGCCA
  GATCACCTAT GTGAGGCGGT GGGAACCATA TGGAGATTTA TATTAGAACT TCAGCAAAGT
  GCACAGCTGC AGCCGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396932457	MGP_WTSI_16_77329560	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs49776585					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396932457	MGP_WTSI_16_77329560	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77126203 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	within coordinates
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	13 bp upstream
Rr518272	regulatory region 518272	within coordinates
Rr518273	regulatory region 518273	36 bp proximal
Rr518274	regulatory region 518274	290 bp proximal
Rr518275	regulatory region 518275	1485 bp proximal
Tssr139047	transcription start site region 139047	70 bp downstream
Tssr139048	transcription start site region 139048	within coordinates
Tssr139049	transcription start site region 139049	42 bp upstream
Tssr139050	transcription start site region 139050	183 bp upstream
Tssr139051	transcription start site region 139051	196 bp upstream
Tssr139052	transcription start site region 139052	227 bp upstream
Tssr139053	transcription start site region 139053	256 bp upstream
Tssr139054	transcription start site region 139054	314 bp upstream
Tssr141826	transcription start site region 141826	210 bp downstream