rs49776994 SNP Detail

Summary

• ID
  rs49776994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82720085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCAGAAT AAAGAACTCA
  GAACCTCTAA GTCACAGAGG AAACAAGAAT ATGGTGGAAC TTTAGAACCC AGGTGAATAA
  AAAACCCTGC TGAAGTGGTG CATGGGCCAG GCACAGACAG GCAAGACTTC ACAAGGTGGG
  AACTAACTCC CAAGTGCTTT GAATCCTAAG GGACATATAT ACCCCTATCC TTCAAGGCAG
  Y
  ACTCAGAATG TGGGTAATGG ATAATATAGA TTTCATAGAT GGGAATTTTA CCTGGTAGAT
  AACATTTAAG AAGATAAAAC CAGTTTGGGG GGAAGGGAGT TGTTCCCAAA TGTTTTAGTC
  TGGCTTTCAG TGAGACTGGT CCTTAAATCC TGGCTGTCAT GCTGAGTGTG CTTGAATGTG
  GTCCCTGGGC TTCAGATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss132459753	ENSMUSSNP1080407	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49776994					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82720085 () rs orientation: forward

Symbol	Name	Function Class
29.MMHAP71FLB5.seq	DNA segment, 29.MMHAP71FLB5.seq	1762 bp proximal
D11Pas73	DNA segment, Chr 11, Pasteur Institute 73	69 bp distal
Gm72007	predicted gene, 72007	within coordinates
Rffl	ring finger and FYVE like domain containing protein	within coordinates
Rr386369	regulatory region 386369	within coordinates
Tssr103583	transcription start site region 103583	1493 bp downstream
Tssr103584	transcription start site region 103584	91 bp downstream
Tssr109581	transcription start site region 109581	217 bp upstream