rs49777524 SNP Detail

Summary

• ID
  rs49777524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTGATAA CAGGAAATAG
  CCCGACCCAA CTGTGCTGAA AATGGAAATG GCCGGTTTTC CATAACCATA AATTTAAATA
  AGGATTCTAC CTTATGTGTG GAAACTAAAA AGCAAAAATC ATAACCAAGG TTTGTTCAAT
  ATTTCTTATT TTTACTGATC TGTTTGTCTT GCATACTTTC TGGACTTTGT AAGTCATTAA
  R
  TGTTAGCCTC TGTTTGAGCT CATGACTTAG TGTTTTATTT CGGATAGCTA CTGTGATGAA
  TCTAAGCTAT CATATTCATT CTGCCCTTGG GAAGCATTCA GCAATCCCTC AGTATCGCAG
  AGGATGCTGG TGACCTAGAA AAACTACTTT CTGTGGTATT TCTAAGAAGC CTCTTGGTTC
  AGGCGGCTCC TGTTCACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460804	NES16446425	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49777524					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460804	NES16446425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591969 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516711	regulatory region 516711	1254 bp distal
Rr516712	regulatory region 516712	within coordinates
Rr516713	regulatory region 516713	811 bp proximal
Tssr138713	transcription start site region 138713	983 bp downstream
Tssr138714	transcription start site region 138714	1220 bp upstream
Tssr141328	transcription start site region 141328	1784 bp upstream
Tssr141329	transcription start site region 141329	803 bp upstream
Tssr141330	transcription start site region 141330	789 bp upstream
Tssr141331	transcription start site region 141331	770 bp upstream
Tssr141332	transcription start site region 141332	743 bp upstream
Tssr141333	transcription start site region 141333	75 bp downstream
Tssr141334	transcription start site region 141334	230 bp downstream
Tssr141335	transcription start site region 141335	1164 bp downstream