rs49780139 SNP Detail

Summary

• ID
  rs49780139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78183682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGCAG GCAGATCTCT
  GAATTCCAGG ACAGTTTGGC CTACACGAGA GAGTTCCAGA ATTACATGGG CTACACAGTG
  AAACCCTGTC TCCAACAACA ACAACAAAAG ATAGAAGTTG GATGTTGCCA TGTTAAATCA
  TGAAATCTCT TGGGATTAAT GAGTGTATGT GAATAGCATG TGAAGGACAT ATGAATAACA
  Y
  CTCTTCTTGG AGAAGTTCTG GAGCCCTAGC CTGGTGGTAT ATACACTGGG GAGGCAGAGC
  CAGTAGGATC AAGAGCTCAA GGTTAAACTA GGCTTTATAT TGAGTTTGAG GCTAACCTGG
  GCTATGTGGA ACCCTGTCTC AACAACACTA ACAACAAAAG TCAAGAGTCA TAATAAATAA
  AACAACAGAG TAGACATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144741476	ENSMUSSNP967267	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49780139					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78183682 () rs orientation: forward

Symbol	Name	Function Class
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	538 bp distal
Rr413697	regulatory region 413697	1108 bp proximal