rs49780685 SNP Detail

Summary

• ID
  rs49780685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:131664174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAGTCGG AAAAATTGGC TATCTTCAGG AAATAGAAGA
  TGCTTAGGCT GGTGGCAAAC CAGACAGTCA GGTGATTCAC AGTCATCCAT ATATAAGAGA
  Y
  GATTTCAATC AGACTACTAG AAAAATACTT ACTTGGATAG AATAGCTTTG CATATGCATC
  TAAAGTTAAT AGCCACACAA TAAAAATCCT GGAAGTTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60948233	NES16180334	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	T	T		T	T	C		T
ss133717513	ENSMUSSNP2852799	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss321962465	CHEV_6_131637229	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49780685					SNP	T	T	C	C	C	T	C	C	C	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60948233	NES16180334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:131664174 () rs orientation: forward

Symbol	Name	Function Class
Tas2r104	taste receptor, type 2, member 104	1467 bp upstream
Tas2r105	taste receptor, type 2, member 105	within coordinates
Tas2r114	taste receptor, type 2, member 114	1923 bp downstream