rs49780750 SNP Detail

Summary

• ID
  rs49780750
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28037417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT TTAATCTCAG CACTCAGGAG
  G
  CAGAGGCTGG TAGATCTCTG TAAAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134709363	ENSMUSSNP6552724	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320689850	CHEV_3_27882190	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49780750					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28037417 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574516	regulatory region 574516	370 bp distal
Rr574517	regulatory region 574517	478 bp proximal
Rr574518	regulatory region 574518	916 bp proximal
Rr574519	regulatory region 574519	1871 bp proximal
Tssr28637	transcription start site region 28637	877 bp upstream
Tssr28638	transcription start site region 28638	1004 bp upstream
Tssr28639	transcription start site region 28639	1367 bp upstream