rs49781708 SNP Detail

Summary

• ID
  rs49781708
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78947192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG TGATTCAGTC ACTACTCCTA
  G
  TACCAGCTTC CATATTAGTT AGGAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144761800	ENSMUSSNP1866752	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319805037	CHEV_1_78966050	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49781708					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78947192 () rs orientation: forward

Symbol	Name	Function Class
Gm5830	predicted pseudogene 5830	1396 bp upstream
Gm29536	predicted gene 29536	within coordinates
Gm69923	predicted gene, 69923	within coordinates
Tssr12431	transcription start site region 12431	1375 bp upstream