rs49782070 SNP Detail

Summary

• ID
  rs49782070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26198139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCTTTA TTTTCATCAG
  GGAACTGTTC CACTTTTAAA TGGGACAGTG GCCTAGATCT GGCCTCAAGG AATGGGACTG
  CCACTGCTCT AAAAGACAAA GTATTAATTA TCAAGCTGCA TTAGCATGTC CCCAGCCTTG
  GTGTGTTTGT TGAGGACAGC TGGGGGGTAT CCACCCAGGG CAAGCATGAG AAGACAGGAT
  R
  ACACTTCCAT TAGATTCTGC ATGGAGCCAC ATAAGGGTGT CCTCTCAGTC AGGAGGCCAA
  GTCCTAGCTA TGGCATCAAC AGCTTCACTT TCAGCTCTGA GGACCCATTT GCAGGGGAGA
  TGCTTAGTAT ACTTCAGGTA GGTCAGATTC ATGGCTCTTC CTCACAGGTG CTTAGGCCTG
  GAGGTTGGAT TGGCTCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255352	NES15700119	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49782070					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255352	NES15700119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26198139 () rs orientation: forward

Symbol	Name	Function Class
Capn15	calpain 15	within coordinates
Rr329923	regulatory region 329923	1739 bp distal
Rr329924	regulatory region 329924	139 bp distal
Rr334464	regulatory region 334464	1339 bp distal
Tssr146884	transcription start site region 146884	722 bp downstream
Tssr146885	transcription start site region 146885	771 bp downstream