rs49782415 SNP Detail

Summary

• ID
  rs49782415
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24339498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCACAA TGCTTTGCAG
  AAAGTGGGAC CAGAGTTGAG ATGTTCAGAC ACACGAGTGC ACAGCCTTCT GTTTCATCTC
  AGGCTTCACT GCTCCTGTCT TTTTTTCCAG AAGTCCCTAA ACTTTATTTG GGCTATGCCA
  ACCCCTATCT GTCCAATGAT AGACCTTTCT GTGTCTCCCT CTTGCAGCCA ACGTGACCGT
  K
  TCCTTACCTG TCCGAGGCTG CGTCCAGGAC GAGACCTGCA CCCGGGATGG GGTGACGGGT
  CCAGGATTCA CACTCAGCGG CTCTTGCTGT CAGGGCCCCC GCTGTAACGC CGACCTTCGC
  AACAAGACCT ATTTCTCCCC TCGAATCCCA CCCCTAGTCC TGCTGCCCCC TCCAACCACC
  GCAGCCCCAT CCACTCGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60982639	NES16150964	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		G	G	G		T
ss322120750	CHEV_7_25425092	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49782415					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982639	NES16150964	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24339498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18555	CpG island 18555	931 bp distal
Cpgi18556	CpG island 18556	within coordinates
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	1097 bp distal
Rr172826	regulatory region 172826	378 bp proximal
Tssr65020	transcription start site region 65020	1290 bp downstream
Tssr65021	transcription start site region 65021	1276 bp downstream
Tssr65022	transcription start site region 65022	126 bp upstream