rs49782982 SNP Detail

Summary

• ID
  rs49782982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:23473942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTGTCA AGACATGCAC
  TAAGCAAATG AGAATATTTA AGTTTCAGAG ATCATCAAAT CTACAATGAT GCATTGAGGT
  TATCAGTTTA AACAGCCTCC GGACCAGCCA AATGCTTGTG GCATTATTCA GTGGTGGTGT
  GCAGATCAAG GCTGTGTTGC TACGTGACCC TAGCCCTAGA AGGTGTAGGA AATAGGAACC
  R
  GAAAGTACTG ATAGAGCCAA AGCCTAAGTC CTTCTCTCTG TTAACTTCAT CCTGTTTCCA
  TTTTTCTTCA GCCATTGTGG TCCTTTTTAT CACCTTGAGG CGTGGCAAAA AAGAGCCCTT
  GATCATTTCC GAGGAGGATG TGCGAGAGAA TGTGGTGACA TATGATGACG AGGGAGGAGG
  GGAGGAAGAC ACCGAAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52537063	NES15597630	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49782982					SNP	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52537063	NES15597630	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23473942 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	within coordinates
Cpgi6966	CpG island 6966	106 bp proximal
Gm56739	predicted gene, 56739	571 bp upstream
Tssr130794	transcription start site region 130794	598 bp upstream