rs49783123 SNP Detail

Summary

• ID
  rs49783123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97274345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAACGG TCTTAGGAAT
  TGTCAGTTTG GTGTGAGGAT CAGGAACCTT GGAGAGTGTG GAAAGCTATT GTTATTCCTC
  CCTTCCCCCA CTGAAGAACT TTACACACCT GAATGCCTGG AGCTGGGGAC TCCCGGGTAG
  AGAATGGGCT GTTTTAAAAT GTGGCATCAT CTTGCTAGCT ATCAACTGTT GAGAAATCGC
  Y
  AGTAATTTAC TAGGCTGCCC TCCCCTCTGG GCCAGAAGAC CTAAAGCAGG CAGAGTGCAG
  ATCTGGCCGG GAACTCCAGC TGGATCTAAC CCCAGGGCCA AATCCCGGGC CCTCCCTCTC
  AGCCTGGTGG CTTTATTGCC TAACTCTGAG TTATCTGCAT ACAAATAGTA TTGATAAGGT
  GATGGGTGGT CCTTTGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63608378	NES17040125	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49783123					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608378	NES17040125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97274345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	376 bp proximal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	within coordinates
Tssr132866	transcription start site region 132866	224 bp upstream
Tssr132867	transcription start site region 132867	694 bp upstream
Tssr132868	transcription start site region 132868	716 bp upstream