rs49784485 SNP Detail

Summary

• ID
  rs49784485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:82934379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGCTG AGGACCATTC
  TCTTTACAAA GCCCCCTTTC AATAGTCTAC TTCCTCTCTT CCTCAAAGAA ATTCAAGCTT
  CCCTCTCTCT TAGATATAGT TCAAAATCAT GGGGATGGCA AAGACTTCCA GTGATTCCAC
  GCAGCTCCTT CTCTGAGTCA ACCTTATTGT TAAATCGATG TACGTGCACG ATGTCTTTAA
  R
  ATAACCAAAG GAAGGCGCTT CACAGACTTG TTGGTGGTTA AGTCTGTAAA ATCTAACTAG
  AAGCCACTCG TTTTCTCCTC ACTGAAAGTG AAAATATAAC ATCTCTTTTG GTATTATAAA
  GTATGGAAAT AATACTCATT TGTTGAGTTC CCTTTCTATT ACCATAATAA ACACTGTTGT
  GGTTTGAATA TGGTTGGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904316	NES15955894	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49784485					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904316	NES15955894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82934379 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	Intron
Rr379683	regulatory region 379683	within coordinates