rs49785209 SNP Detail

Summary

• ID
  rs49785209
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137444833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGTGCC TGGCACAAGG
  CGGCAGGCAT TGAGCTGCTG CTCCCTGCAT CCACAACCCT CCCTCGCTCT CCACAGGCCT
  CCAGGCTCAT TGTCACCTTT GACGAACATG TTATCAGCAA TAACTTCAAG TTTGGAGTCA
  TTTATCAGAA GCTTGGCCAG GTGTGTCTGC CCTTCTTCTC TCCCCCCCCC CCCCCCCCCC
  S
  GCCTGGTCCT GCGGCCCACC CCACCCCACC TCGCCCTCAG CCGTCGCCTG CAGGGCACTC
  CGTTTCCCAG GAGCTTGGGG ACTGCTCATG GCCACTCTGG GAGGAAGTAG GGCTGAGGGA
  GGGCCACTCG GGAGCTGCCA CCGTGTGACC TTGCCCCCGT GTGGTCTCCA GACCTCTGAG
  GAAGAACTAT TCAGTACCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147617638	ENSMUSSNP5090455	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321366737	CHEV_4_137273437	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49785209					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137444833 () rs orientation: forward

Symbol	Name	Function Class
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1968 bp proximal
Rr96794	regulatory region 96794	1610 bp distal
Rr100343	regulatory region 100343	1767 bp proximal
Tssr39776	transcription start site region 39776	167 bp downstream
Tssr39777	transcription start site region 39777	141 bp downstream
Tssr39778	transcription start site region 39778	1692 bp upstream
Tssr39779	transcription start site region 39779	1722 bp upstream
Tssr39780	transcription start site region 39780	1998 bp upstream