rs49785469 SNP Detail

Summary

• ID
  rs49785469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC ATAAGTGCTG ATCCTTGAAA
  R
  AGAATATGTC TCCTGCCAGA CTCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145709009	ENSMUSSNP2181581	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325406556	CHEV_17_47867441	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49785469					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041417 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	217 bp proximal
Tssr5147	transcription start site region 5147	1741 bp downstream
Tssr5148	transcription start site region 5148	1179 bp upstream
Tssr5149	transcription start site region 5149	991 bp upstream
Tssr145004	transcription start site region 145004	1750 bp downstream
Tssr145005	transcription start site region 145005	1729 bp downstream
Tssr145006	transcription start site region 145006	1700 bp downstream
Tssr145007	transcription start site region 145007	1668 bp downstream
Tssr145008	transcription start site region 145008	1647 bp downstream
Tssr145009	transcription start site region 145009	1619 bp downstream
Tssr145010	transcription start site region 145010	1237 bp downstream
Tssr145011	transcription start site region 145011	1218 bp downstream
Tssr145012	transcription start site region 145012	1201 bp downstream
Tssr145013	transcription start site region 145013	1149 bp downstream
Tssr145014	transcription start site region 145014	355 bp downstream
Tssr145015	transcription start site region 145015	340 bp downstream
Tssr145016	transcription start site region 145016	336 bp downstream
Tssr145017	transcription start site region 145017	106 bp upstream
Tssr145018	transcription start site region 145018	118 bp upstream
Tssr145019	transcription start site region 145019	149 bp upstream
Tssr145020	transcription start site region 145020	170 bp upstream
Tssr145021	transcription start site region 145021	196 bp upstream
Tssr145022	transcription start site region 145022	228 bp upstream
Tssr145023	transcription start site region 145023	255 bp upstream
Tssr145024	transcription start site region 145024	366 bp upstream
Tssr145025	transcription start site region 145025	710 bp upstream
Tssr145026	transcription start site region 145026	966 bp upstream
Tssr145027	transcription start site region 145027	1899 bp upstream
Tssr145028	transcription start site region 145028	1927 bp upstream
Tssr145029	transcription start site region 145029	1968 bp upstream
Tssr148459	transcription start site region 148459	1691 bp upstream
Tssr148460	transcription start site region 148460	1639 bp upstream
Tssr148461	transcription start site region 148461	1627 bp upstream
Tssr148462	transcription start site region 148462	1584 bp upstream
Tssr148463	transcription start site region 148463	1211 bp upstream
Tssr148464	transcription start site region 148464	1126 bp upstream
Tssr148465	transcription start site region 148465	365 bp upstream
Tssr148466	transcription start site region 148466	331 bp upstream
Tssr148467	transcription start site region 148467	137 bp downstream
Tssr148468	transcription start site region 148468	168 bp downstream
Tssr148469	transcription start site region 148469	258 bp downstream
Tssr148470	transcription start site region 148470	1935 bp downstream
Tssr148471	transcription start site region 148471	1954 bp downstream
Tssr148472	transcription start site region 148472	1970 bp downstream
Tssr148473	transcription start site region 148473	1987 bp downstream