rs49785881 SNP Detail

Summary

• ID
  rs49785881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30256513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCACACTCC GGTCAAATAG CTTGATCACA TACGTATCTG
  GGGTGGTAAG GTAGGCGATA AGTGTGTAGT TCCTGGCTCC ACACCCACCC TCTCAGTCCC
  Y
  TGCCTACTCA CTGGATCTCT GAGGACCCCC CTCAGCGAGC CCATCGTCCA TCTCCCTCCT
  CTTCTTCCTC CGCTGGTGGG GGAAGCGGGC AGATGGCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682457	ENSMUSSNP5311599	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322135251	CHEV_7_31342107	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49785881					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30256513 () rs orientation: forward

Symbol	Name	Function Class
Hspb6	heat shock protein, alpha-crystallin-related, B6	1645 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr71791	transcription start site region 71791	1654 bp downstream
Tssr71792	transcription start site region 71792	1685 bp downstream