rs49786491 SNP Detail

Summary

• ID
  rs49786491
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54868539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC CTCCTCAAAT GGAACAGTCC
  C
  CACCCTCCTC CCTCTGAGAG AGTCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139566968	ENSMUSSNP5050800	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324638702	CHEV_14_55249919	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49786491					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54868539 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	149 bp downstream
Cpgi6468	CpG island 6468	987 bp proximal
Psmb11	proteasome (prosome, macropain) subunit, beta type, 11	1526 bp downstream
Tssr128611	transcription start site region 128611	1202 bp downstream
Tssr128612	transcription start site region 128612	1221 bp downstream