rs49787376 SNP Detail

Summary

• ID
  rs49787376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69830520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTTGTC TTCAACACCT
  GAAAAAAAAA ATCATTGTGT CCATCTGTAA ACTGTACTCA CAAGCAAAGA GTAAAGCTTT
  ATCCAGAATT CTACCCACCT GACGATTCCT GATAGCAACT GTACACTCTT AGTGTTTTCT
  GTATAGATAC AATAAGAGGA TATAAAATTA CATCTTATTT TATTTTAAAC CCTTTCTTCA
  Y
  GGGGCCATTT CCATAAAAGA ATAGTCTTGT ATTTGAGGGC ACATGCCTTT GGAGCATAGA
  ATAAAACCCA GCTAAGACTA CATAACTAGG ATGTCCCATT GTTAAAACTG AATTCTTGCT
  GGGCGGTGGT GGCGCACACC TTTGATCCCA GCACTTGGGA GGCAGAGGCA GGTGGATTTC
  AGAGTTCAAG GCCAGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61285365	NES16895485	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49787376					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61285365	NES16895485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69830520 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Tssr93978	transcription start site region 93978	1573 bp downstream
Tssr93979	transcription start site region 93979	1390 bp downstream
Tssr93980	transcription start site region 93980	278 bp downstream